Publications


Manuscripts

    • L Lemaire, F Jay, I Lee, K Csilléry, MGB Blum Goodness-of-fit statistics for approximate Bayesian computation. arXiv 2016 arXiv:1601.04096. Link 

    Publications 

    • K Caye, F Jay, O Michel, O Francois. Fast Inference of Individual Admixture Coefficients Using Geographic Data. The Annals of Applied Statistics (to appear) Link
    • MD Martin, F Jay, S Castellano and M Slatkin (2017). Determination of genetic relatedness from low‐coverage human genome sequences using pedigree simulations. Molecular Ecology. DOI: 10.1111/mec.14188 Link
    •  S Boitard, W Rodriguez, F Jay, S Mona, and F Austerlitz (2016). Inferring population size history from large samples of genome-wide molecular data-an approximate Bayesian computation approach. PLoS Genet 12, no. 3, e1005877 Link 
    • F Jay, O François, EY Durand, and MGB Blum (2015). POPS : A software for prediction of population genetic structure using latent regression models. Journal of Statistical Software, 68(9).  DOI: 10.18637/jss.v068.i09. Link
    • Q Fu, H Li, P Moorjani, F Jay, et al. (2014). Genome sequence of a 45,000-year-old modern human from western Siberia. Nature, 514(7523), 445-449. Link
    • M Pons-Salort, J Serra-Cobo, F Jay, et al. (2014). Insights into Persistence Mechanisms of a Zoonotic Virus in Bat Colonies Using a Multispecies Metapopulation Mode. Plos One. DOI: 10.1371/journal.pone.0095610. Link
       
    • K Prüfer, F Racimo, N Patterson, F Jay, S Sankararaman, et al. (2014) The complete genome sequence of a Neanderthal from the Altai Mountains. Nature 505(7481): 43–49. Link
    • JD Wall, MA Yang, F Jay, et al. (2013) Higher levels of Neanderthal ancestry in East Asians than in Europeans. Genetics, 194(1), 199-209,
       
    • JA Cahill, RE Green, TL Fulton, M Stiller, F Jay, et al. (2013). Genomic evidence for island population conversion resolves conflicting theories of polar bear evolution. Plos Genetics, 9(3):e1003345. Link
       
    • F Jay, P Sjödin, M Jakobsson, MGB Blum (2013). Anisotropic isolation by distance: the main orientations of human genetic differentiation. Molecular Biology and Evolution 30(3), 513-525. Link   --   Front cover
       
    • M Meyer, M Kircher, M-T Gansauge, H Li, F Racimo, S Mallick, JG Schraiber, F Jay, et al. (2012). A High-Coverage Genome Sequence from an Archaic Denisovan Individual. Science, 338(6104), 222-226. Link
       
    • CM Schlebusch, P Skoglund, P Sjödin, LM Gattepaille, D Hernandez, F Jay, et al. (2012). Genomic Variation in Seven Khoe-San Groups Reveals Adaptation and Complex African History. Science, 338(6105), 374-379. Link
       
    • F Jay, S Manel, N Alvarez, EY Durand, W Thuiller, R Holderegger, P Taberlet, O François (2012). Forecasting changes in population genetic structure of Alpine plants in response to global warming. Molecular Ecology, 21(10), 2354–2368. Link
       
    • F Jay, MGB Blum, E Frichot, O François (2011). Modèles à variables latentes en génétique des populations. Journal de la Société Française de Statistique, 152(3). Link
       
    • F Jay, O François, and MGB Blum (2011). Predictions of Native American population structure using linguistic covariates in a hidden regression framework. Plos One, 6(1): e16227. Link
       
    • EY Durand, F Jay, G Gaggiotti, and O François (2009). Spatial inference of admixture proportions and secondary contact zones. Molecular Biology and Evolution, 26(9), 1963-1973. Link 

     

    PhD manuscript 

    • Bayesian methods for population genetics : relationships between genetic population structure and environment.   Link (in French)

    Talks (subselection)

    • F Jay, S Boitard, F Austerlitz. Reconstructing past history from whole-genomes:  an ABC approach handling recombining data. Invited speaker. European Mathematical Genetics Meeting, 2017, Estonia.
    • F Jay, S Boitard, and F Austerlitz. An Approximate Bayesian Computation approach to reconstruct demography from sequence data. Featured talk, SMBE 2015, Vienne, Autriche
    • F Jay, Neandertal Consortium, and M Slatkin. Recent inbreeding in a high coverage Neandertal genome. CompBio, Computational Biology Symposium, 2013. Marconi Conference Center, USA.
    • F Jay, O François, and MGB Blum. Predictions of Native American population structure using linguistic covariates in a hidden regression framework. PopGroup44 Population Genetics Group, 2011. University of Hull, UK.
    • F Jay, O François, MGB Blum. Approche Bayésienne pour mesurer l'influence de l'environnement sur la structure génétique des populations. GDR 1928 Génomique des populations et génomique évolutive, 2009. Paris, France.
    • F Jay, O François, and MGB Blum. Genes, people and languages revisited. Semovi, le séminaire Rhône-Alpin de Modélisation du Vivant, 2009. Grenoble, France. 
    • F Jay, O François, and MGB Blum. Influence de l'environnement sur la structure génétique de populations. PPD 31ème Réunion du Groupe de Biologie et Génétique des Populations, 2009. Grenoble, France.